SNP Profiles of CCN 51 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
1._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
2._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
3._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
4._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
5._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
6._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
7._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
8._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
9._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
10._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
11._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
12._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
13._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
14._GC-06-4-1-04	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
15._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	TT
16._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	CT
17._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	CT	AA	CT
18._RUQ_1737	_	_	GG	_	_	_	_	TT	_	CT	_	_	AA	_
19._GC-07-19-1-21	AG	AG	CC	AA	AA	AC	AG	AA	_	_	AA	AG	AA	AA
20._RUQ_1736	AG	AG	CC	AA	AA	AC	AG	AA	_	_	AA	AG	AA	AA
21._MITC-000000	AG	AG	CC	AA	AA	AC	AG	AA	_	_	AA	AG	AA	AA
22._CCN_51	CC	GG	CC	TT	TT	AA	CC	GG	TT	CC	AA	TT	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
1._GC-07-019-1-21	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
2._CCN_51	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
3._CCN_51	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
4._CCN_51	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
5._CCN_51	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
6._CCN_51	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
7._GC-07-019-1-21	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
8._GC-07-019-1-21	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
9._GC-07-019-1-21	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
10._GC-07-019-1-21	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
11._GC-07-019-1-21	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
12._CCN_51	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
13._CCN_51	AA	_	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
14._GC-06-4-1-04	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
15._GC-07-019-1-21	AA	_	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
16._CCN_51	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
17._CCN_51	AA	GG	CT	CC	GG	AG	CT	CC	TT	CT	AC	AG	GG	AA
18._RUQ_1737	_	_	_	_	GG	AG	_	CC	_	_	AA	_	_	_
19._GC-07-19-1-21	AA	GG	AG	GG	CC	_	AG	CC	AA	_	AC	_	GG	AA
20._RUQ_1736	AA	GG	AG	GG	CC	_	AG	CC	AA	_	AC	_	GG	AA
21._MITC-000000	AA	GG	AG	GG	CC	_	AG	CC	AA	_	AC	_	GG	AA
22._CCN_51	AA	GG	TT	CC	TT	GG	CC	CC	GG	CC	CC	GG	GG	TT

	29	30	31	32	33	34	35	36	37
_Input profile	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-07-019-1-21	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
2._CCN_51	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
3._CCN_51	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
4._CCN_51	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
5._CCN_51	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
6._CCN_51	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
7._GC-07-019-1-21	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
8._GC-07-019-1-21	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
9._GC-07-019-1-21	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
10._GC-07-019-1-21	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
11._GC-07-019-1-21	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
12._CCN_51	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
13._CCN_51	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
14._GC-06-4-1-04	CT	AA	_	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
15._GC-07-019-1-21	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
16._CCN_51	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
17._CCN_51	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
18._RUQ_1737	_	AA	_	_	_	_	AC	_	_	X_X	X_X	X_X	X_X	X_X
19._GC-07-19-1-21	AG	AA	CG	AA	GG	AA	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
20._RUQ_1736	AG	AA	CG	AA	GG	AA	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
21._MITC-000000	AG	AA	CG	AA	GG	AA	AC	TT	GG	X_X	X_X	X_X	X_X	X_X
22._CCN_51	TT	GG	GG	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X	X_X	X_X

Input profile: CCN_51

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

1._CCN_51 GC-07-019-1-21

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

2._CCN_51

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

3._CCN_51

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

4._CCN_51

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

5._CCN_51

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

6._CCN_51

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._CCN_51 GC-07-019-1-21

identical
37 shared markers

Verified View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

8._CCN_51 GC-07-019-1-21

identical
37 shared markers

Reference View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

9._CCN_51 GC-07-019-1-21

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

10._CCN_51 GC-07-019-1-21

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

11._CCN_51 GC-07-019-1-21

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

12._CCN_51

identical
37 shared markers

Verified View View all Any

Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

13._CCN_51

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

14._CCN_51 GC-06-4-1-04

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

15._CCN_51 GC-07-019-1-21

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

16._CCN_51

98.6 %
37 shared markers

View View all Clone Any

USAPEN

Dapeng Zhang, 2016

17._CCN_51

98.6 %
37 shared markers

View View all Clone Any

USASPC

Dapeng Zhang, 2016

18._CCN_51 RUQ_1737

95 %
10 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

19._CCN_51 GC-07-19-1-21

50 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1

Notes: Brazil_Selections_Poss_grandparent

20._CCN_51 RUQ_1736

50 %
32 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

21._CCN_51 MITC-000000

50 %
32 shared markers

Offtype View View all

USDA-SHRS, United States of America

22._CCN_51

47.3 %
37 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP577	23	TcSNP560	24	TcSNP534	25	TcSNP529
26	TcSNP469	27	TcSNP429	28	TcSNP372	29	TcSNP242	30	TcSNP230
31	TcSNP226	32	TcSNP193	33	TcSNP151	34	TcSNP150	35	TcSNP144
36	TcSNP32	37	TcSNP25